Experiment: 2Z2C

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	292	15% PEG 4000, 100mM TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K

Crystal Properties
Matthews coefficient	Solvent content
2.06	40.27

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.127	α = 108.69
b = 80.369	β = 111.07
c = 84.871	γ = 101.17

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH	MIRRORS	2006-09-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE X12	1.03317	EMBL/DESY, HAMBURG	X12

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.05	19.14	93.8	0.071	0.071	7.5	1.9	89740	84171	-3	-3	31.7

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.05	2.1	93.2		0.295	0.295	2.7	1.9	5854

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1UAE	2.05	19.14	79991	4202	93.8	0.19487	0.19102	0.27068	RANDOM	10.419

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.01	-0.01		-0.01	-0.05	-0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.426
r_dihedral_angle_4_deg	18.732
r_dihedral_angle_3_deg	18.229
r_dihedral_angle_1_deg	6.827
r_scangle_it	3.319
r_scbond_it	2.196
r_angle_refined_deg	1.71
r_mcangle_it	1.269
r_mcbond_it	0.814
r_nbtor_refined	0.314

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.426
r_dihedral_angle_4_deg	18.732
r_dihedral_angle_3_deg	18.229
r_dihedral_angle_1_deg	6.827
r_scangle_it	3.319
r_scbond_it	2.196
r_angle_refined_deg	1.71
r_mcangle_it	1.269
r_mcbond_it	0.814
r_nbtor_refined	0.314
r_symmetry_vdw_refined	0.291
r_symmetry_hbond_refined	0.256
r_nbd_refined	0.239
r_xyhbond_nbd_refined	0.193
r_chiral_restr	0.11
r_bond_refined_d	0.016
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	12532
Nucleic Acid Atoms
Solvent Atoms	932
Heterogen Atoms	192

Software

Software
Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
MAR345dtb	data collection
MAR345	data collection
XDS	data scaling
XSCALE	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.