2YX0

Crystal structure of P. horikoshii TYW1


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.4649.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.92α = 90
b = 60.85β = 90
c = 153.81γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 2102006-06-03MSINGLE WAVELENGTH
21x-rayCCDADSC QUANTUM 3152006-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A0.97898Photon FactoryAR-NW12A
2SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1.00000Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.25002044118.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.2131.4918175923890.1940.1940.242RANDOM42.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
6.30.52-6.81
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d23.7
c_scangle_it9.5
c_scbond_it8.25
c_mcangle_it6.19
c_mcbond_it5.06
c_angle_deg1.6
c_improper_angle_d1.11
c_bond_d0.013
c_angle_deg_prot
c_bond_d_na
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d23.7
c_scangle_it9.5
c_scbond_it8.25
c_mcangle_it6.19
c_mcbond_it5.06
c_angle_deg1.6
c_improper_angle_d1.11
c_bond_d0.013
c_angle_deg_prot
c_bond_d_na
c_angle_d
c_dihedral_angle_d_prot
c_angle_d_na
c_improper_angle_d_na
c_improper_angle_d_prot
c_angle_d_prot
c_bond_d_prot
c_angle_deg_na
c_dihedral_angle_d_na
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2661
Nucleic Acid Atoms
Solvent Atoms113
Heterogen Atoms

Software

Software
Software NamePurpose
CNSrefinement