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Solution structure of the PDZ domain from mouse LIM domain kinase
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 0.47mM U-15N, 13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 293 2 3D_15N-separated_NOESY 0.47mM U-15N, 13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800
NMR Refinement Method Details Software torsion angle dynamics The structures are based on a total of 1438 restraints, 1347 are NOE-derived distance constraints, 91 dihedral angle restraints. VNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations, target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was determined using triple-resonance NMR spectroscopy.
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 6.1C Varian 2 processing NMRPipe 20031121 Delaglio, F. 3 data analysis NMRView 5.0.4 Johnson, B. A. 4 data analysis KUJIRA 0.9820 Kobayashi, N. 5 structure solution CYANA 2.1 Guntert, P. 6 refinement CYANA 2.1 Guntert, P.