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Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors (SadAK9-cfI)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GCM PDB ENTRY 1GCM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% (V/V) BUTANEDIOL, 100 MM SODIUM ACETATE PH 4.5
Crystal Properties Matthews coefficient Solvent content 3.6 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54 α = 90 b = 54 β = 90 c = 306.98 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 37.2 99.5 0.14 8.59 3.25 12334
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.97 99.4 0.6 2.07 3.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GCM 2.8 34.53 11712 618 99.43 0.22469 0.22094 0.2306 0.29738 0.2933 RANDOM 34.145
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 13.15 13.15 -26.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.124 r_dihedral_angle_3_deg 18.168 r_dihedral_angle_4_deg 17.135 r_dihedral_angle_1_deg 6.432 r_scangle_it 1.698 r_angle_refined_deg 1.137 r_scbond_it 0.967 r_angle_other_deg 0.877 r_mcangle_it 0.818 r_mcbond_it 0.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.124 r_dihedral_angle_3_deg 18.168 r_dihedral_angle_4_deg 17.135 r_dihedral_angle_1_deg 6.432 r_scangle_it 1.698 r_angle_refined_deg 1.137 r_scbond_it 0.967 r_angle_other_deg 0.877 r_mcangle_it 0.818 r_mcbond_it 0.445 r_chiral_restr 0.062 r_mcbond_other 0.057 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1986 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing