☰ Navigation Tabs
High-resolution crystal structures of N-Acetylmannosamine kinase: Insights about substrate specificity, activity and inhibitor modelling.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M CALCIUM ACETATE, 0.1 M SODIUM CACODYLATE PH 6.5 AND 40% PEG 300.
Crystal Properties Matthews coefficient Solvent content 2.83 56.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.73 α = 90 b = 90.73 β = 90 c = 100.78 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 45.3 100 0.06 30.66 12.9 52083 4.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.64 45.37 49478 2605 100 0.14933 0.1482 0.1636 0.17019 0.1813 RANDOM 25.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.39 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.213 r_dihedral_angle_4_deg 19.749 r_dihedral_angle_3_deg 14.316 r_dihedral_angle_1_deg 6.637 r_scangle_it 5.643 r_scbond_it 3.468 r_mcangle_it 2.122 r_angle_refined_deg 2.068 r_mcbond_it 1.274 r_angle_other_deg 1.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.213 r_dihedral_angle_4_deg 19.749 r_dihedral_angle_3_deg 14.316 r_dihedral_angle_1_deg 6.637 r_scangle_it 5.643 r_scbond_it 3.468 r_mcangle_it 2.122 r_angle_refined_deg 2.068 r_mcbond_it 1.274 r_angle_other_deg 1.184 r_mcbond_other 0.435 r_chiral_restr 0.157 r_bond_refined_d 0.026 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2271 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling