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Structure of unreduced ferric cytochrome c peroxidase obtained by multicrystal method
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XIL PDB ENTRY 2XIL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.07 59.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.118 α = 90 b = 75.6 β = 90 c = 106.752 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU-MSC SATURN 944+ VARIMAX HF OPTICS (75 MICROMETER FOCUS, 1.2KW) 2010-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 12.38 92.24 0.056 16.9 4 35815
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.9 87.7 0.099 9.6 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 2XIL 1.81 10 33851 88 0.1512 0.1407 0.1963 0.1817 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2 3010
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.2 s_similar_adp_cmpnt 0.056 s_non_zero_chiral_vol 0.049 s_zero_chiral_vol 0.048 s_bond_d 0.045 s_angle_d 0.029 s_from_restr_planes 0.0261 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2367 Nucleic Acid Atoms Solvent Atoms 580 Heterogen Atoms 64
Software Software Software Name Purpose SHELXL-97 refinement MOSFLM data reduction SCALA data scaling REFMAC phasing