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Crystal structure of Xrn1-substrate complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M MES PH 6.2, 1% (V/V) PEG 300.
Crystal Properties Matthews coefficient Solvent content 3.22 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.99 α = 90 b = 149.99 β = 90 c = 154.86 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 100 99.1 0.1 20 7.2 29498 2 76.04
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.28 95.7 0.83 2.52 7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 3.2 74.995 2 29498 1180 99.1 0.2265 0.2246 0.2225 0.2711 0.271 79.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.8673 -2.8673 5.7346
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.917 f_angle_d 1.017 f_chiral_restr 0.066 f_bond_d 0.011 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8104 Nucleic Acid Atoms 65 Solvent Atoms 17 Heterogen Atoms 1
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHENIX phasing autoSHARP phasing PHENIX refinement