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Clathrin Terminal Domain Complexed with Pitstop 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C9I PDB ENTRY 1C9I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 20% PEG 3350, 150 MM POTASSIUM ACETATE, 0.1 M TRIS, PH 8.0.
Crystal Properties Matthews coefficient Solvent content 2.72 54.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.34 α = 90 b = 73.915 β = 90 c = 84.384 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 CCD MARMOSAIC 225 mm CCD 2009-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 33.85 95.1 0.05 24.34 5.9 47297 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.7 0.24 4.19 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT PDB ENTRY 1C9I 1.7 33.85 44946 2366 100 0.16071 0.15864 0.19973 0.2044 RANDOM 12.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.8 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.498 r_dihedral_angle_4_deg 19.298 r_dihedral_angle_3_deg 13.398 r_dihedral_angle_1_deg 6.651 r_scangle_it 4.663 r_scbond_it 2.977 r_mcangle_it 2.116 r_angle_refined_deg 1.865 r_mcbond_it 1.275 r_angle_other_deg 1.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.498 r_dihedral_angle_4_deg 19.298 r_dihedral_angle_3_deg 13.398 r_dihedral_angle_1_deg 6.651 r_scangle_it 4.663 r_scbond_it 2.977 r_mcangle_it 2.116 r_angle_refined_deg 1.865 r_mcbond_it 1.275 r_angle_other_deg 1.006 r_mcbond_other 0.374 r_chiral_restr 0.122 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2803 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing