2XVS

Crystal structure of human TTC5 (Strap) C-terminal OB domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.50.18M SODIUM IODIDE, 0.02M SODIUM ACETATE, 20% PEG3350, 10% ETHYLENE GLYCOL, 0.45% DMSO, 0.1M BIS-TRIS-PROPANE PH8.5
Crystal Properties
Matthews coefficientSolvent content
2.0540

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.26α = 90
b = 62.39β = 90
c = 78.77γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2008-11-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.833.398.60.18.73.51424614.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9910.52.12.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.878.771352172398.340.17550.172420.23638RANDOM18.906
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.550.020.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.11
r_dihedral_angle_4_deg21.447
r_sphericity_free16.483
r_dihedral_angle_3_deg12.901
r_scangle_it8.361
r_scbond_it7.007
r_dihedral_angle_1_deg5.944
r_mcangle_it4.438
r_mcbond_it3.239
r_angle_other_deg2.009
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.11
r_dihedral_angle_4_deg21.447
r_sphericity_free16.483
r_dihedral_angle_3_deg12.901
r_scangle_it8.361
r_scbond_it7.007
r_dihedral_angle_1_deg5.944
r_mcangle_it4.438
r_mcbond_it3.239
r_angle_other_deg2.009
r_angle_refined_deg1.524
r_mcbond_other0.974
r_symmetry_hbond_refined0.228
r_nbd_refined0.211
r_symmetry_vdw_other0.189
r_nbd_other0.185
r_nbtor_refined0.167
r_symmetry_vdw_refined0.16
r_xyhbond_nbd_refined0.154
r_nbtor_other0.093
r_chiral_restr0.085
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1237
Nucleic Acid Atoms
Solvent Atoms116
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing