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Crystal Structure of Trypanosoma brucei rhodesiense Adenosine Kinase Complexed with Activator
Crystallization Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.24 α = 90 b = 61.24 β = 90 c = 193.85 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 58 98 0.2 3.6 3.2 9747 -10 47.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 98 0.48 1.8 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 58.42 9034 441 97.21 0.23453 0.23158 0.29646 0.2555 RANDOM 32.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.629 r_dihedral_angle_3_deg 15.181 r_dihedral_angle_4_deg 12.332 r_dihedral_angle_1_deg 4.806 r_angle_refined_deg 0.969 r_scangle_it 0.789 r_mcangle_it 0.496 r_scbond_it 0.456 r_nbtor_refined 0.299 r_mcbond_it 0.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.629 r_dihedral_angle_3_deg 15.181 r_dihedral_angle_4_deg 12.332 r_dihedral_angle_1_deg 4.806 r_angle_refined_deg 0.969 r_scangle_it 0.789 r_mcangle_it 0.496 r_scbond_it 0.456 r_nbtor_refined 0.299 r_mcbond_it 0.276 r_nbd_refined 0.172 r_symmetry_vdw_refined 0.149 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.06 r_symmetry_hbond_refined 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2600 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing