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Complex of the 2nd and 3rd LIM domains of TES with the EVH1 DOMAIN of MENA and the N-Terminal domain of actin-like protein Arp7A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IYB PDB ENTRY 2IYB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 PROTEIN: 37.5 MG/ML OF PROTEIN COMPLEX IN 20MM TRIS-HCL PH 8.0, 100MM NACL RESERVOIR: 17.5 PEG 8K, 0.1MTRIS PH 8.5, 0.15M KSCN SITTING DROPS 2:1 PROTEIN:RESERVOIR, 22 DEG C CRYOPROTECTANT: N-PARATONE
Crystal Properties Matthews coefficient Solvent content 2.96 58.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.829 α = 90 b = 86.791 β = 90 c = 115.266 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2007-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 25.74 96.9 0.11 14.2 4.2 12008 56.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 79.7 0.5 2.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IYB 2.62 25.56 11400 565 99.64 0.21776 0.21525 0.2185 0.26811 RANDOM 43.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 4.2 -2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.621 r_dihedral_angle_4_deg 20.525 r_dihedral_angle_3_deg 18.024 r_dihedral_angle_1_deg 8.97 r_scangle_it 3.715 r_scbond_it 2.24 r_angle_refined_deg 1.894 r_mcangle_it 1.557 r_mcbond_it 0.805 r_chiral_restr 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.621 r_dihedral_angle_4_deg 20.525 r_dihedral_angle_3_deg 18.024 r_dihedral_angle_1_deg 8.97 r_scangle_it 3.715 r_scbond_it 2.24 r_angle_refined_deg 1.894 r_mcangle_it 1.557 r_mcbond_it 0.805 r_chiral_restr 0.139 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2035 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing