X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V2EPDB ENTRY 2V2E

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5KPI 50 MM PH 6.5, MPD 30% VOLUME
Crystal Properties
Matthews coefficientSolvent content
3.0459.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.05α = 90
b = 75.139β = 90
c = 106.919γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.671.7683.50.15.42.139037
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.7675.80.272.42

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2V2E1.6933.1443031229396.090.159120.157070.19717RANDOM17.625
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.872
r_dihedral_angle_4_deg25.165
r_dihedral_angle_3_deg14.218
r_scangle_it6.617
r_dihedral_angle_1_deg6.308
r_scbond_it5.598
r_mcangle_it5.557
r_mcbond_it5.447
r_angle_refined_deg2.377
r_chiral_restr0.192
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.872
r_dihedral_angle_4_deg25.165
r_dihedral_angle_3_deg14.218
r_scangle_it6.617
r_dihedral_angle_1_deg6.308
r_scbond_it5.598
r_mcangle_it5.557
r_mcbond_it5.447
r_angle_refined_deg2.377
r_chiral_restr0.192
r_bond_refined_d0.031
r_gen_planes_refined0.014
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2369
Nucleic Acid Atoms
Solvent Atoms626
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
CCP4phasing