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Structure of the bacteriophage T4 long tail fibre needle-shaped receptor-binding tip
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 10 MM HEPES-NAOH PH 7.5, 1 MM MANGANOUS CHLORIDE, 5 % (W/V) POLY-ETHYLENEGLYCOL 6000, 0.1 M SODIUM CITRATE PH 5.
Crystal Properties Matthews coefficient Solvent content 3.19 62.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.34 α = 90 b = 53.98 β = 100.43 c = 112.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH PAIR OF (300X40X15) MM3 LONG PT COATED SI MIRROR, 260MM USABLE, IN A KIRKPATRICK-BAEZ GEOMETRY 2010-02-14 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC CCD PAIR OF (300X40X15) MM3 LONG PT COATED SI MIRROR, 260MM USABLE, IN A KIRKPATRICK-BAEZ GEOMETRY 2010-02-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2 2 SYNCHROTRON ESRF BEAMLINE ID23-1 1.73945, 1.74115 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 22 99.9 0.13 5 3.8 47653 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.44 1.6 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.2 22 45619 2028 99.94 0.18184 0.17933 0.1897 0.23813 THIN SHELLS 20.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 -0.5 -0.58 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.932 r_dihedral_angle_4_deg 21.805 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_1_deg 7.02 r_scangle_it 3.659 r_scbond_it 2.239 r_angle_refined_deg 1.394 r_mcangle_it 1.297 r_mcbond_it 0.677 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.932 r_dihedral_angle_4_deg 21.805 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_1_deg 7.02 r_scangle_it 3.659 r_scbond_it 2.239 r_angle_refined_deg 1.394 r_mcangle_it 1.297 r_mcbond_it 0.677 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.184 r_nbd_refined 0.173 r_xyhbond_nbd_refined 0.146 r_symmetry_vdw_refined 0.139 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4656 Nucleic Acid Atoms Solvent Atoms 665 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing