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STRUCTURE OF AURORA A IN COMPLEX WITH MLN8054
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MQ4 PDB ENTRY 1MQ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 0.2M K2HPO4, 20% PEG3350, 1MM TRIS(HYDROXYPROPYL)PHOSPHINE, pH 7.6
Crystal Properties Matthews coefficient Solvent content 3.12 60.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.21 α = 90 b = 83.21 β = 90 c = 167.241 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN944 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 24.5 98.3 0.07 18.2 5.8 8043 2 100
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 96.2 0.48 2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MQ4 2.91 24.5 2 7927 363 98.338 0.247 0.2438 0.3031 0.2852 RANDOM 76.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.457 -0.729 -1.457 2.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.185 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 14.873 r_dihedral_angle_1_deg 4.612 r_angle_refined_deg 0.97 r_scangle_it 0.896 r_mcangle_it 0.504 r_scbond_it 0.494 r_nbtor_refined 0.298 r_mcbond_it 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.185 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 14.873 r_dihedral_angle_1_deg 4.612 r_angle_refined_deg 0.97 r_scangle_it 0.896 r_mcangle_it 0.504 r_scbond_it 0.494 r_nbtor_refined 0.298 r_mcbond_it 0.272 r_symmetry_vdw_refined 0.24 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.174 r_xyhbond_nbd_refined 0.111 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1877 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing