2X3W | pdb_00002x3w

structure of mouse syndapin I (crystal form 2)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.3		2.5UL SYNDAPIN(5MG/ML IN 50MM HEPES, 50MM NACL) MIXED WITH 0.5UL 0.3M GLYCYL-GLYCYL-GLYCINE AND 2UL WELL SOLUTION 0.1M NAAC/HAC PH5.0, 3%(W/V) PEG4000., pH 5.3

Crystal Properties
Matthews coefficient	Solvent content
2.2	44

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.28	α = 90
b = 154.61	β = 90
c = 191.74	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD	DOUBLE CRYSTAL MONOCHROMATOR WITH 2 SETS OF MIRRORS	2009-10-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1		BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.64	34.35	99.7	0.13	10.81	7.17		38766		-3	64

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.64	2.75	99.1		0.69	2.88	7.03

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.64	34.36	36827	1939	100	0.22335	0.22066	0.22	0.27373	0.27	THIN SHELLS	30.357

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.05			-6.14		4.09

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.929
r_dihedral_angle_3_deg	18.247
r_dihedral_angle_4_deg	14.226
r_scangle_it	5.59
r_dihedral_angle_1_deg	4.285
r_scbond_it	3.828
r_mcangle_it	2.463
r_mcbond_it	1.977
r_angle_refined_deg	0.85
r_angle_other_deg	0.6
r_mcbond_other	0.37
r_symmetry_hbond_refined	0.285
r_symmetry_vdw_other	0.284
r_nbd_refined	0.27
r_symmetry_vdw_refined	0.234
r_nbd_other	0.232
r_xyhbond_nbd_refined	0.227
r_nbtor_refined	0.197
r_nbtor_other	0.095
r_xyhbond_nbd_other	0.073
r_chiral_restr	0.049
r_bond_refined_d	0.006
r_gen_planes_refined	0.002
r_bond_other_d
r_gen_planes_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7449
Nucleic Acid Atoms
Solvent Atoms	62
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing