2WVN

Structure of the HET-s N-terminal domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18292CRYSTALLIZED AT 292K WITH 20 MM TRIS PH 8.0, 30% PEG4000
Crystal Properties
Matthews coefficientSolvent content
3.2461.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.66α = 90
b = 122.66β = 90
c = 122.66γ = 90
Symmetry
Space GroupP 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.624099.70.0624.110.110044-10
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.622.77990.4633.910.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRASTHROUGHOUTNONE2.6238.78956647799.80.2190.2160.27RANDOM60.77
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.442
r_dihedral_angle_3_deg24.879
r_dihedral_angle_4_deg23.931
r_dihedral_angle_1_deg6.016
r_scangle_it3.741
r_scbond_it2.247
r_angle_refined_deg1.843
r_mcangle_it1.634
r_mcbond_it0.877
r_symmetry_hbond_refined0.328
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.442
r_dihedral_angle_3_deg24.879
r_dihedral_angle_4_deg23.931
r_dihedral_angle_1_deg6.016
r_scangle_it3.741
r_scbond_it2.247
r_angle_refined_deg1.843
r_mcangle_it1.634
r_mcbond_it0.877
r_symmetry_hbond_refined0.328
r_nbtor_refined0.313
r_symmetry_vdw_refined0.256
r_nbd_refined0.242
r_chiral_restr0.14
r_xyhbond_nbd_refined0.128
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1683
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
SHARPphasing