2WSV

Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with lactose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1810 MM TRIS-HCL PH 8.0, 1 MM EDTA, 28% (W/V) POLY-ETHYLENE GLYCOL 3350, 100 MM SODIUM NITRATE, 5 MM DITHIOTHREITOL, 70 MM LACTOSE
Crystal Properties
Matthews coefficientSolvent content
2.0540.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.62α = 90
b = 38.78β = 93.53
c = 70.19γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHTWO CYLINDRICAL VERTICAL FOCUSING PARABOLIC MIRRORS2009-05-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
124099.60.0710.43.52109423.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1199.30.323.33.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WSU, CHAIN A24020006108799.660.184980.182520.22752RANDOM26.951
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.8-2.32-1.41-0.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.013
r_dihedral_angle_4_deg19.684
r_dihedral_angle_3_deg13.149
r_dihedral_angle_1_deg6.956
r_scangle_it4.356
r_scbond_it3.265
r_mcangle_it2.95
r_mcbond_it2.072
r_angle_refined_deg1.309
r_angle_other_deg0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.013
r_dihedral_angle_4_deg19.684
r_dihedral_angle_3_deg13.149
r_dihedral_angle_1_deg6.956
r_scangle_it4.356
r_scbond_it3.265
r_mcangle_it2.95
r_mcbond_it2.072
r_angle_refined_deg1.309
r_angle_other_deg0.79
r_mcbond_other0.741
r_symmetry_vdw_refined0.26
r_symmetry_vdw_other0.218
r_nbd_refined0.2
r_nbd_other0.196
r_nbtor_refined0.173
r_xyhbond_nbd_refined0.134
r_symmetry_hbond_refined0.085
r_nbtor_other0.084
r_chiral_restr0.074
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2347
Nucleic Acid Atoms
Solvent Atoms184
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing