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Crystallographic analysis of monomeric CstII
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RO7 PDB ENTRY 1RO7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M AMMONIUM CITRATE TRIBASIC, 10% PEG 3350, PH 8.0
Crystal Properties Matthews coefficient Solvent content 2.27 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.634 α = 90 b = 116.634 β = 90 c = 45.385 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2009-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 34 100 0.06 18.4 4.1 14714 3.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 100 0.31 3.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1RO7 2.25 34 13972 743 100 0.17868 0.17659 0.1886 0.21863 0.2233 RANDOM 19.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.21 -2.21 4.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.319 r_dihedral_angle_3_deg 17.115 r_dihedral_angle_4_deg 9.551 r_dihedral_angle_1_deg 6.195 r_scangle_it 2.407 r_scbond_it 1.528 r_angle_refined_deg 1.366 r_mcangle_it 0.952 r_angle_other_deg 0.635 r_mcbond_it 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.319 r_dihedral_angle_3_deg 17.115 r_dihedral_angle_4_deg 9.551 r_dihedral_angle_1_deg 6.195 r_scangle_it 2.407 r_scbond_it 1.528 r_angle_refined_deg 1.366 r_mcangle_it 0.952 r_angle_other_deg 0.635 r_mcbond_it 0.51 r_mcbond_other 0.125 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2046 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing