☰ Navigation Tabs
Tandem GNAT protein from the clavulanic acid biosynthesis pathway (with AcCoA)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPW PDB ENTRY 2WPW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 3MG/ML PROTEIN, THREE-FOLD MOLAR EXCESS ACCOA, 1M SODIUM CITRATE, 0.07M CACODYLATE PH6.5
Crystal Properties Matthews coefficient Solvent content 2.79 55.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.985 α = 90 b = 70.093 β = 134.38 c = 106.287 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 32.2 99.3 0.09 11.6 3.4 34742 35.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.45 95.3 0.24 5.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WPW 2.31 31.82 32050 1662 96.31 0.19104 0.18785 0.253 0.2252 RANDOM 22.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.71 0.22 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.643 r_dihedral_angle_4_deg 24.214 r_dihedral_angle_3_deg 17.981 r_dihedral_angle_1_deg 6.37 r_scangle_it 3.893 r_scbond_it 2.586 r_angle_refined_deg 2.286 r_mcangle_it 1.372 r_mcbond_it 0.794 r_chiral_restr 0.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.643 r_dihedral_angle_4_deg 24.214 r_dihedral_angle_3_deg 17.981 r_dihedral_angle_1_deg 6.37 r_scangle_it 3.893 r_scbond_it 2.586 r_angle_refined_deg 2.286 r_mcangle_it 1.372 r_mcbond_it 0.794 r_chiral_restr 0.214 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4942 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing