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Intermediate and final states of human kinesin Eg5 in complex with S-trityl-L-cysteine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X88 PDB ENTRY 1X88
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 22% PEG 3350, 0.15M SODIUM TARTRATE DIBASIC DIHYDRATE, 0.1M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.79 55.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.5 α = 90 b = 96.5 β = 90 c = 124.441 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC CCD 2009-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.16 99.9 0.09 12.8 5.8 87598 2 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.4 4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1X88 2 29.16 83103 4351 99.88 0.1579 0.15468 0.21841 0.2368 RANDOM 36.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.5 r_dihedral_angle_4_deg 19.77 r_dihedral_angle_3_deg 17.69 r_sphericity_free 13.491 r_sphericity_bonded 8.69 r_dihedral_angle_1_deg 7.454 r_scangle_it 6.659 r_scbond_it 4.474 r_mcangle_it 3.348 r_rigid_bond_restr 2.935
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.5 r_dihedral_angle_4_deg 19.77 r_dihedral_angle_3_deg 17.69 r_sphericity_free 13.491 r_sphericity_bonded 8.69 r_dihedral_angle_1_deg 7.454 r_scangle_it 6.659 r_scbond_it 4.474 r_mcangle_it 3.348 r_rigid_bond_restr 2.935 r_mcbond_it 2.148 r_angle_refined_deg 1.548 r_chiral_restr 0.141 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7789 Nucleic Acid Atoms Solvent Atoms 838 Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing