☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A IN COMPLEX WITH CHLORIDE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 HIS6-HOD AT 150 MG/ML IN STORAGE BUFFER IN THE PRESENCE OF A RESERVOIR COMPOSED OF 1.65 M SODIUM/POTASSIUM TARTRATE, 0.1 M HEPES PH 7.0 SOAKING WITH 1M NACL FOR 60 SECONDS
Crystal Properties Matthews coefficient Solvent content 2.45 49.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.77 α = 90 b = 167 β = 90 c = 166.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2009-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 55.64 98 0.13 12.8 5.4 35477 70.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 96.1 0.44 2.3 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.7 46.38 33360 1786 97.64 0.21272 0.21094 0.2178 0.24569 0.2527 RANDOM 34.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.67 2.43 -4.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.564 r_dihedral_angle_4_deg 18.887 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.742 r_scangle_it 1.633 r_angle_refined_deg 1.073 r_scbond_it 0.944 r_angle_other_deg 0.808 r_mcangle_it 0.702 r_mcbond_it 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.564 r_dihedral_angle_4_deg 18.887 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.742 r_scangle_it 1.633 r_angle_refined_deg 1.073 r_scbond_it 0.944 r_angle_other_deg 0.808 r_mcangle_it 0.702 r_mcbond_it 0.36 r_mcbond_other 0.065 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8992 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling