2WLX

Putative thiosulfate sulfurtransferase YnjE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.529120% PEG 10000, 0.1M HEPES PH 7.5, TEMP 18 C
Crystal Properties
Matthews coefficientSolvent content
2.244

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.4α = 90
b = 83.43β = 90
c = 131.91γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH SX-165SECOND CRYSTAL SAGITALLY BENT2009-05-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95099.50.0913.46.621910929.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.92.199.30.414.56.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTNONE1.939.7732106117799.490.198860.196930.25056RANDOM21.27
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.06-2.313.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.017
r_dihedral_angle_4_deg14.383
r_dihedral_angle_3_deg13.862
r_dihedral_angle_1_deg6.413
r_scangle_it3.865
r_scbond_it2.619
r_angle_refined_deg1.742
r_mcangle_it1.638
r_angle_other_deg1.005
r_mcbond_it0.995
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.017
r_dihedral_angle_4_deg14.383
r_dihedral_angle_3_deg13.862
r_dihedral_angle_1_deg6.413
r_scangle_it3.865
r_scbond_it2.619
r_angle_refined_deg1.742
r_mcangle_it1.638
r_angle_other_deg1.005
r_mcbond_it0.995
r_mcbond_other0.284
r_chiral_restr0.104
r_bond_refined_d0.02
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3205
Nucleic Acid Atoms
Solvent Atoms365
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling