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CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A ANAEROBICALLY COMPLEXED WITH ITS NATURAL SUBSTRATE 1-H-3-HYDROXY-4-OXOQUINALDINE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 PROTEIN AT 150 MG/ML IN STORAGE BUFFER 1.65M NA/K TARTRATE, 0.1M HEPES PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.36 47.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.81 α = 90 b = 167.2 β = 90 c = 167.22 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2008-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.4 99.6 0.07 18.5 6.1 74241 31.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 99.4 0.31 5 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.1 38.84 70375 3784 99.16 0.17746 0.17602 0.2192 0.20395 RANDOM 25.676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.87 -7.95 3.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.183 r_dihedral_angle_4_deg 17.614 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 6.15 r_scangle_it 3.152 r_scbond_it 2.01 r_angle_refined_deg 1.571 r_angle_other_deg 1.49 r_mcangle_it 1.163 r_mcbond_it 0.637
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.183 r_dihedral_angle_4_deg 17.614 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 6.15 r_scangle_it 3.152 r_scbond_it 2.01 r_angle_refined_deg 1.571 r_angle_other_deg 1.49 r_mcangle_it 1.163 r_mcbond_it 0.637 r_mcbond_other 0.202 r_chiral_restr 0.095 r_bond_refined_d 0.019 r_bond_other_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8921 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 169
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling