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Crystal structure of the human MGC45594 gene product in complex with diclofenac
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C0C PDB ENTRY 2C0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% 1,2 PROPANDIOL, 10% GLYCEROL, 0.1M NA/K-PO4 PH 6.2
Crystal Properties Matthews coefficient Solvent content 2.26 45.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.834 α = 94.61 b = 51.572 β = 91.54 c = 75.716 γ = 101.72
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.5 95 0.08 8.3 4 54443 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 90 0.46 1.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C0C 1.9 75.38 47367 2568 91.7 0.168 0.165 0.1891 0.214 0.2322 RANDOM 11.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.57 -1.55 0.03 2.5 0.22 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.61 r_dihedral_angle_4_deg 16.698 r_dihedral_angle_3_deg 13.023 r_scangle_it 6.056 r_dihedral_angle_1_deg 5.917 r_scbond_it 4.588 r_mcangle_it 2.728 r_mcbond_it 1.94 r_angle_refined_deg 1.516 r_angle_other_deg 0.935
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.61 r_dihedral_angle_4_deg 16.698 r_dihedral_angle_3_deg 13.023 r_scangle_it 6.056 r_dihedral_angle_1_deg 5.917 r_scbond_it 4.588 r_mcangle_it 2.728 r_mcbond_it 1.94 r_angle_refined_deg 1.516 r_angle_other_deg 0.935 r_mcbond_other 0.792 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4985 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 291
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing