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Fasciola hepatica sigma class GST
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U3I PDB ENTRY 1U3I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.15M KBR, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.728 α = 90 b = 87.751 β = 90 c = 93.781 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH XENOCS FOX2D CU_25P 2009-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS ROTATING ANODE GENERATOR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 19.43 98.2 0.07 6.8 3.8 62227
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 91.9 0.48 4.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1U3I 1.59 64.02 60197 1899 97.93 0.17661 0.17517 0.1717 0.22243 0.2207 RANDOM 23.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.21 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.812 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 15.621 r_scangle_it 8.737 r_scbond_it 6.7 r_dihedral_angle_1_deg 5.558 r_mcangle_it 4.625 r_mcbond_it 3.5 r_angle_refined_deg 2.41 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.812 r_dihedral_angle_4_deg 20.577 r_dihedral_angle_3_deg 15.621 r_scangle_it 8.737 r_scbond_it 6.7 r_dihedral_angle_1_deg 5.558 r_mcangle_it 4.625 r_mcbond_it 3.5 r_angle_refined_deg 2.41 r_nbtor_refined 0.327 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.225 r_xyhbond_nbd_refined 0.213 r_chiral_restr 0.198 r_bond_refined_d 0.03 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3442 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing