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Crystal structure of AFV1-102, a protein from the Acidianus Filamentous Virus 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.5-2M AMMONIUM SULFATE, 0.1M HEPES PH 7.5, 2% PEG400
Crystal Properties Matthews coefficient Solvent content 2.1 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.89 α = 90 b = 62.89 β = 90 c = 110.837 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 54.47 99.5 0.11 4.4 34.7 10006 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.59 0.8 38
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.95 54.47 9472 481 99.24 0.21619 0.21339 0.27431 0.2812 RANDOM 38.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.3 -0.6 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.554 r_dihedral_angle_3_deg 13.617 r_rigid_bond_restr 12.305 r_scbond_it 10.81 r_scangle_it 8.131 r_dihedral_angle_4_deg 7.775 r_dihedral_angle_1_deg 5.982 r_sphericity_bonded 5.484 r_sphericity_free 3.987 r_mcangle_it 2.473
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.554 r_dihedral_angle_3_deg 13.617 r_rigid_bond_restr 12.305 r_scbond_it 10.81 r_scangle_it 8.131 r_dihedral_angle_4_deg 7.775 r_dihedral_angle_1_deg 5.982 r_sphericity_bonded 5.484 r_sphericity_free 3.987 r_mcangle_it 2.473 r_angle_refined_deg 1.313 r_mcbond_it 1.279 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 906 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing