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crystal structure of Mycobacterium tuberculosis rv0371c homolog from mycobacterium sp. strain JC1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other MYCOBACTERIUM TUBERCULOSIS RV0371C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 28% PEG 400, 0.1M HEPES PH 7.5, 0.2M CALCIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.2 44.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.081 α = 90 b = 61.746 β = 90 c = 80.059 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 294 CCD ADSC CCD MIRRORS 2008-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 94.1 0.07 42.8 8.9 23465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 72.4 0.24 2.8 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MYCOBACTERIUM TUBERCULOSIS RV0371C 1.6 24.5 23465 1254 94.1 0.175 0.173 0.1756 0.2 0.2074 RANDOM 23.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.16 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.961 r_dihedral_angle_4_deg 17.119 r_dihedral_angle_3_deg 13.205 r_dihedral_angle_1_deg 10.126 r_scangle_it 5.846 r_scbond_it 3.948 r_mcangle_it 2.483 r_mcbond_it 1.592 r_angle_refined_deg 1.254 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.961 r_dihedral_angle_4_deg 17.119 r_dihedral_angle_3_deg 13.205 r_dihedral_angle_1_deg 10.126 r_scangle_it 5.846 r_scbond_it 3.948 r_mcangle_it 2.483 r_mcbond_it 1.592 r_angle_refined_deg 1.254 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.25 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_refined 0.186 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1467 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling AMoRE phasing