2WAL

Crystal Structure of human GADD45gamma


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.52 M MALONATE, 0.1 M BENZONATE, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
3.6966.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.717α = 90
b = 108.717β = 90
c = 73.371γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-03-12MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.2BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.320930.0718.77.0921647
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32080.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTNONE2.419.81187839881000.2160.2150.251RANDOM48.03
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.950.480.95-1.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.823
r_dihedral_angle_3_deg18.656
r_dihedral_angle_4_deg13.275
r_dihedral_angle_1_deg6.97
r_scangle_it6.219
r_scbond_it4.727
r_mcangle_it2.948
r_mcbond_it2.236
r_angle_refined_deg1.308
r_angle_other_deg0.906
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.823
r_dihedral_angle_3_deg18.656
r_dihedral_angle_4_deg13.275
r_dihedral_angle_1_deg6.97
r_scangle_it6.219
r_scbond_it4.727
r_mcangle_it2.948
r_mcbond_it2.236
r_angle_refined_deg1.308
r_angle_other_deg0.906
r_symmetry_vdw_other0.255
r_nbd_refined0.233
r_symmetry_vdw_refined0.203
r_nbd_other0.194
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.151
r_symmetry_hbond_refined0.145
r_nbtor_other0.087
r_chiral_restr0.075
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2142
Nucleic Acid Atoms
Solvent Atoms54
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALEPACKdata scaling