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2 beta-glucans (6-O-glucosyl-laminaritriose) in both donor and acceptor sites of GH16 Laminarinase 16A from Phanerochaete chrysosporium.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 45 MG/ML LAM16A CRYSTALIZED IN 20% PEG 3350, 0.2 M AMMONIUM NITRATE AND 10 MM NAOAC PH 5, THEN SOAKED WITH 10 MM LIGAND FOR 90 MIN
Crystal Properties Matthews coefficient Solvent content 2 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.056 α = 90 b = 46.69 β = 90 c = 152.871 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 34.42 97.3 0.04 11.3 7 39543 2 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 81.8 0.12 5.78 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.56 34.06 1.562 39468 1981 99.5 0.152 0.151 0.1493 0.171 0.1713 RANDOM 12.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.071 -0.041
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.985 r_dihedral_angle_4_deg 16.937 r_dihedral_angle_3_deg 10.681 r_dihedral_angle_1_deg 6.875 r_scangle_it 2.733 r_scbond_it 1.904 r_angle_refined_deg 1.485 r_mcangle_it 1.288 r_mcbond_it 0.796 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.985 r_dihedral_angle_4_deg 16.937 r_dihedral_angle_3_deg 10.681 r_dihedral_angle_1_deg 6.875 r_scangle_it 2.733 r_scbond_it 1.904 r_angle_refined_deg 1.485 r_mcangle_it 1.288 r_mcbond_it 0.796 r_nbtor_refined 0.316 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.197 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 422 Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing