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Air-oxidized structure of the first GAF domain of Mycobacterium tuberculosis DosS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG4000, 0.2M CALCIUM CHLORIDE IN TRIS-HCL, PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.13 41.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.351 α = 90 b = 86.801 β = 90 c = 100.791 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 87.1 0.07 43.9 11.7 55575 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 27.92 52671 2821 87.1 0.19335 0.19203 0.1891 0.21743 0.2152 RANDOM 22.757
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 18.361 r_dihedral_angle_3_deg 11.759 r_scangle_it 5.823 r_dihedral_angle_1_deg 5.522 r_scbond_it 3.98 r_mcangle_it 2.817 r_mcbond_it 1.804 r_angle_refined_deg 1.45 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.267 r_dihedral_angle_4_deg 18.361 r_dihedral_angle_3_deg 11.759 r_scangle_it 5.823 r_dihedral_angle_1_deg 5.522 r_scbond_it 3.98 r_mcangle_it 2.817 r_mcbond_it 1.804 r_angle_refined_deg 1.45 r_nbtor_refined 0.306 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2264 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing