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Crystal Structure of the C-terminal Domain of B. subtilis SpoVT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM NACL, 100 MM HEPES PH 7.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.7 55.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.93 α = 90 b = 63.93 β = 90 c = 77.33 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 20 97.8 0.08 14.3 11.5 19148 4.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.19 91.3 0.27 4.7 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.5 20 24815 1322 99.32 0.22332 0.22235 0.22 0.24217 0.2374 RANDOM 23.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.37 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.996 r_dihedral_angle_3_deg 12.3 r_dihedral_angle_4_deg 5.839 r_dihedral_angle_1_deg 5.041 r_scangle_it 2.341 r_scbond_it 1.475 r_mcangle_it 1.074 r_angle_refined_deg 0.99 r_mcbond_it 0.594 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.996 r_dihedral_angle_3_deg 12.3 r_dihedral_angle_4_deg 5.839 r_dihedral_angle_1_deg 5.041 r_scangle_it 2.341 r_scbond_it 1.475 r_mcangle_it 1.074 r_angle_refined_deg 0.99 r_mcbond_it 0.594 r_nbtor_refined 0.296 r_symmetry_hbond_refined 0.203 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 885 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction XSCALE data scaling RESOLVE phasing