☰ Navigation Tabs
Structure of CDK2 in complex with an imidazolyl pyrimidine, compound 5c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN-HOUSE CDK2 STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 8% PEG 3350, 0.1M HEPES PH 7.5, 0.05M AMMONIUM ACETATE
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.643 α = 90 b = 72.62 β = 90 c = 71.947 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2001-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 25.16 97.5 0.05 15.6 2.9 17949 2 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.15 91.7 0.29 4.3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN-HOUSE CDK2 STRUCTURE 2.04 200 17890 917 0.2052 0.2066 0.2337 0.2198 RANDOM 31.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.337 -10.79 7.453
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.868 c_scbond_it 2.17 c_mcangle_it 2.031 c_mcbond_it 1.407 c_angle_deg 1.30989 c_bond_d 0.006177 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.868 c_scbond_it 2.17 c_mcangle_it 2.031 c_mcbond_it 1.407 c_angle_deg 1.30989 c_bond_d 0.006177 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2208 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 27
Software Software Software Name Purpose CNX refinement MOSFLM data reduction SCALA data scaling AMoRE phasing