☰ Navigation Tabs
Co-bound structure of bjFixLH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XJ3 PDB ENTRY 1XJ3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 NACL, PEI, CAPSO, PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.923 α = 73.37 b = 50.296 β = 70.26 c = 58.993 γ = 72.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 90.7 0.04 29 1.9 57814 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.67 93.7 0.32 4 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XJ3 1.61 46.88 55565 2948 91.6 0.208 0.206 0.205 0.249 0.2468 RANDOM 16.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.153 r_dihedral_angle_4_deg 17.727 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 10.166 r_scangle_it 3.11 r_scbond_it 2.103 r_angle_refined_deg 1.643 r_mcangle_it 1.23 r_mcbond_it 0.767 r_nbtor_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.153 r_dihedral_angle_4_deg 17.727 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_1_deg 10.166 r_scangle_it 3.11 r_scbond_it 2.103 r_angle_refined_deg 1.643 r_mcangle_it 1.23 r_mcbond_it 0.767 r_nbtor_refined 0.324 r_nbd_refined 0.291 r_symmetry_vdw_refined 0.21 r_symmetry_hbond_refined 0.209 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.115 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3330 Nucleic Acid Atoms Solvent Atoms 468 Heterogen Atoms 183
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling EPMR phasing