X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1850% METHANE PENTANE-DIOL (MPD), 0-0.2M NH4H2PO4 AND 0.1M TRIS-CL, PH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.6452.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.962α = 90
b = 103.257β = 90
c = 150.93γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293CCDADSC CCD2006-07-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-3ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.92099.30.13114.820985
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.199.20.6924.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE2.92019844108299.50.2270.2240.267RANDOM56.43
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.53-0.733.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.911
r_dihedral_angle_3_deg17.567
r_dihedral_angle_4_deg15.018
r_scangle_it6.456
r_dihedral_angle_1_deg6.213
r_scbond_it3.645
r_mcangle_it2.424
r_mcbond_it1.398
r_angle_refined_deg1.273
r_nbtor_refined0.318
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.911
r_dihedral_angle_3_deg17.567
r_dihedral_angle_4_deg15.018
r_scangle_it6.456
r_dihedral_angle_1_deg6.213
r_scbond_it3.645
r_mcangle_it2.424
r_mcbond_it1.398
r_angle_refined_deg1.273
r_nbtor_refined0.318
r_symmetry_vdw_refined0.252
r_nbd_refined0.228
r_xyhbond_nbd_refined0.189
r_chiral_restr0.083
r_symmetry_hbond_refined0.08
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6094
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms118

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
SHELXphasing