X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.60.1 M SODIUM CACODYLATE PH 6.6, 15% (W/V) PEG 8000, 200 MM MAGNESIUM ACETATE, 20% (V/V) GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
4.0269

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 185.96α = 90
b = 185.96β = 90
c = 104.76γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-09-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.62099.70.07154.9640882.466.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.899.50.512.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTNONE2.627.926088732051000.1860.1850.222RANDOM67.04
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.98-1.49-2.984.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.66
r_dihedral_angle_4_deg16.678
r_dihedral_angle_3_deg16.143
r_dihedral_angle_1_deg6.209
r_scangle_it2.515
r_scbond_it1.523
r_angle_refined_deg1.505
r_mcangle_it0.933
r_mcbond_it0.558
r_nbtor_refined0.315
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.66
r_dihedral_angle_4_deg16.678
r_dihedral_angle_3_deg16.143
r_dihedral_angle_1_deg6.209
r_scangle_it2.515
r_scbond_it1.523
r_angle_refined_deg1.505
r_mcangle_it0.933
r_mcbond_it0.558
r_nbtor_refined0.315
r_nbd_refined0.222
r_symmetry_vdw_refined0.191
r_xyhbond_nbd_refined0.154
r_symmetry_hbond_refined0.131
r_chiral_restr0.101
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9014
Nucleic Acid Atoms
Solvent Atoms387
Heterogen Atoms189

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
SHELXDphasing
SHARPphasing
autoSHARPphasing