2VNW

Structure of PKA-PKB chimera complexed with (1-(9H-Purin-6-yl) piperidin-4-yl)methanamine


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3146.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.84α = 90
b = 74.545β = 90
c = 79.932γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.093593.40.044.72.923214
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.092.11860.15

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0935.2223214121993.10.1790.1750.247RANDOM20.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.9-0.44-0.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.988
r_dihedral_angle_4_deg16.385
r_dihedral_angle_3_deg15.281
r_dihedral_angle_1_deg5.969
r_angle_refined_deg1.328
r_angle_other_deg0.85
r_symmetry_vdw_other0.287
r_nbd_refined0.212
r_nbd_other0.199
r_symmetry_vdw_refined0.194
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.988
r_dihedral_angle_4_deg16.385
r_dihedral_angle_3_deg15.281
r_dihedral_angle_1_deg5.969
r_angle_refined_deg1.328
r_angle_other_deg0.85
r_symmetry_vdw_other0.287
r_nbd_refined0.212
r_nbd_other0.199
r_symmetry_vdw_refined0.194
r_nbtor_refined0.189
r_scangle_it0.135
r_mcangle_it0.115
r_xyhbond_nbd_refined0.111
r_scbond_it0.111
r_mcbond_it0.089
r_nbtor_other0.086
r_chiral_restr0.082
r_symmetry_hbond_refined0.055
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2945
Nucleic Acid Atoms
Solvent Atoms391
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement