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Family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by Clostridium perfringens in complex with blood group B-trisaccharide ligand.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.8 42.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.691 α = 90 b = 98.551 β = 90 c = 49.128 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC BLUE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-002
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 100 95.4 0.04 14.6 3.9 55064 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.49 97.6 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.45 100 55064 2917 95.4 0.182 0.18 0.226 0.2385 RANDOM 12.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.28 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.153 r_dihedral_angle_4_deg 20.789 r_dihedral_angle_3_deg 12.178 r_dihedral_angle_1_deg 6.786 r_scangle_it 4.917 r_scbond_it 3.902 r_mcangle_it 2.721 r_mcbond_it 2.072 r_angle_refined_deg 1.821 r_angle_other_deg 0.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.153 r_dihedral_angle_4_deg 20.789 r_dihedral_angle_3_deg 12.178 r_dihedral_angle_1_deg 6.786 r_scangle_it 4.917 r_scbond_it 3.902 r_mcangle_it 2.721 r_mcbond_it 2.072 r_angle_refined_deg 1.821 r_angle_other_deg 0.961 r_symmetry_vdw_other 0.304 r_symmetry_vdw_refined 0.279 r_nbd_refined 0.263 r_symmetry_hbond_refined 0.23 r_nbd_other 0.204 r_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.177 r_chiral_restr 0.129 r_nbtor_other 0.089 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2652 Nucleic Acid Atoms Solvent Atoms 574 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling