X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2G6QPDB ENTRY 2G6Q

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.1442.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.516α = 90
b = 68.516β = 90
c = 28.174γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2007-09-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7668.5196.90.089.93.8121782
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.761.8186.80.381.72.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2G6Q1.7668.511217863596.90.160.1560.227RANDOM31.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.55-0.551.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.318
r_dihedral_angle_3_deg19.534
r_dihedral_angle_4_deg17.705
r_dihedral_angle_1_deg12.226
r_scangle_it9.192
r_scbond_it7.057
r_mcangle_it4.771
r_mcbond_it3.343
r_angle_refined_deg1.816
r_symmetry_hbond_refined0.829
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.318
r_dihedral_angle_3_deg19.534
r_dihedral_angle_4_deg17.705
r_dihedral_angle_1_deg12.226
r_scangle_it9.192
r_scbond_it7.057
r_mcangle_it4.771
r_mcbond_it3.343
r_angle_refined_deg1.816
r_symmetry_hbond_refined0.829
r_xyhbond_nbd_refined0.511
r_symmetry_vdw_refined0.391
r_nbd_refined0.328
r_nbtor_refined0.318
r_chiral_restr0.179
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms942
Nucleic Acid Atoms
Solvent Atoms127
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing