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MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G6Q PDB ENTRY 2G6Q
Crystallization Crystal Properties Matthews coefficient Solvent content 2.14 42.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.516 α = 90 b = 68.516 β = 90 c = 28.174 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 68.51 96.9 0.08 9.9 3.8 12178 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.81 86.8 0.38 1.7 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2G6Q 1.76 68.51 12178 635 96.9 0.16 0.156 0.1585 0.227 0.2245 RANDOM 31.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 -0.55 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.318 r_dihedral_angle_3_deg 19.534 r_dihedral_angle_4_deg 17.705 r_dihedral_angle_1_deg 12.226 r_scangle_it 9.192 r_scbond_it 7.057 r_mcangle_it 4.771 r_mcbond_it 3.343 r_angle_refined_deg 1.816 r_symmetry_hbond_refined 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.318 r_dihedral_angle_3_deg 19.534 r_dihedral_angle_4_deg 17.705 r_dihedral_angle_1_deg 12.226 r_scangle_it 9.192 r_scbond_it 7.057 r_mcangle_it 4.771 r_mcbond_it 3.343 r_angle_refined_deg 1.816 r_symmetry_hbond_refined 0.829 r_xyhbond_nbd_refined 0.511 r_symmetry_vdw_refined 0.391 r_nbd_refined 0.328 r_nbtor_refined 0.318 r_chiral_restr 0.179 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 942 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing