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Crystal structure of barley thioredoxin h isoform 2 in partially radiation-reduced state
Crystallization Crystal Properties Matthews coefficient Solvent content 1.78 30.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.254 α = 90 b = 38.601 β = 105.81 c = 57.282 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 24.6 95.3 0.03 13.5 3.5 21964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 82.5 0.2 3.6 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 24.59 20815 1148 95.3 0.205 0.204 0.2089 0.238 0.2444 RANDOM 35.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.2 -0.31 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_4_deg 22.904 r_dihedral_angle_3_deg 12.555 r_dihedral_angle_1_deg 4.243 r_scangle_it 1.231 r_angle_refined_deg 0.865 r_scbond_it 0.782 r_mcangle_it 0.462 r_mcbond_it 0.314 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_4_deg 22.904 r_dihedral_angle_3_deg 12.555 r_dihedral_angle_1_deg 4.243 r_scangle_it 1.231 r_angle_refined_deg 0.865 r_scbond_it 0.782 r_mcangle_it 0.462 r_mcbond_it 0.314 r_nbtor_refined 0.296 r_nbd_refined 0.167 r_symmetry_vdw_refined 0.146 r_symmetry_hbond_refined 0.079 r_xyhbond_nbd_refined 0.075 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1723 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement