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Crystal structure of Natural Cinnamomin (Isoform III)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AAI PDB ENTRY 2AAI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.15M CACL2, 10% (W/V) PEG8000, AND 0.1M SODIUM CACODYLATE AT PH 6.5 AND 24
Crystal Properties Matthews coefficient Solvent content 2.27 45.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.388 α = 90 b = 126.329 β = 90 c = 161.451 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 17.31 98.9 0.12 5.3 4 21826 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.02 99.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AAI 2.95 17 21818 1151 98.9 0.242 0.238 0.309 RANDOM 21.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.13 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.332 r_dihedral_angle_4_deg 20.427 r_dihedral_angle_3_deg 20.054 r_dihedral_angle_1_deg 10.171 r_scangle_it 2.522 r_angle_refined_deg 2.07 r_scbond_it 1.561 r_mcangle_it 1.329 r_mcbond_it 0.732 r_symmetry_hbond_refined 0.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.332 r_dihedral_angle_4_deg 20.427 r_dihedral_angle_3_deg 20.054 r_dihedral_angle_1_deg 10.171 r_scangle_it 2.522 r_angle_refined_deg 2.07 r_scbond_it 1.561 r_mcangle_it 1.329 r_mcbond_it 0.732 r_symmetry_hbond_refined 0.354 r_symmetry_vdw_refined 0.323 r_nbtor_refined 0.318 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.128 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8074 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing