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Crystal Structure of the reactive loop Cleaved Corticosteroid Binding Globulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QMN PDB ENTRY 1QMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 10-20% PEG3350, 0.2M NACL, pH 7.4
Crystal Properties Matthews coefficient Solvent content 1.89 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.941 α = 81.94 b = 39.74 β = 84.06 c = 112.113 γ = 65.39
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 CCD MARRESEARCH 2007-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 55.4 96 0.07 8.7 2.2 51706 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.94 94.1 0.35 1.5 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QMN 1.84 55.47 49061 2643 96 0.194 0.192 0.241 0.2535 RANDOM 27.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 -0.34 1.06 0.85 -0.22 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.203 r_dihedral_angle_4_deg 17.817 r_dihedral_angle_3_deg 15.993 r_dihedral_angle_1_deg 6.583 r_scangle_it 2.528 r_scbond_it 1.66 r_angle_refined_deg 1.272 r_mcangle_it 1.033 r_mcbond_it 0.562 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.203 r_dihedral_angle_4_deg 17.817 r_dihedral_angle_3_deg 15.993 r_dihedral_angle_1_deg 6.583 r_scangle_it 2.528 r_scbond_it 1.66 r_angle_refined_deg 1.272 r_mcangle_it 1.033 r_mcbond_it 0.562 r_nbtor_refined 0.301 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.123 r_metal_ion_refined 0.118 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5703 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing