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Crystal structure of Ag(I)CusF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZEQ PDB ENTRY 1ZEQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.5 M (NH4)2SO4 5% ISOPROPANOL 0.1 M NA CITRATE, PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.07 40.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.658 α = 90 b = 44.229 β = 90 c = 44.241 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 44 99.9 0.06 26.4 6.7 3624 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.46 100 0.21 6.9 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZEQ 2.33 44.24 3453 155 99.7 0.242 0.241 0.264 RANDOM 70.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.11 -2.21 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 49.605 r_dihedral_angle_4_deg 37.916 r_dihedral_angle_3_deg 18.72 r_dihedral_angle_1_deg 6.955 r_scangle_it 1.759 r_angle_refined_deg 1.569 r_scbond_it 1.111 r_mcangle_it 0.722 r_mcbond_it 0.482 r_symmetry_hbond_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 49.605 r_dihedral_angle_4_deg 37.916 r_dihedral_angle_3_deg 18.72 r_dihedral_angle_1_deg 6.955 r_scangle_it 1.759 r_angle_refined_deg 1.569 r_scbond_it 1.111 r_mcangle_it 0.722 r_mcbond_it 0.482 r_symmetry_hbond_refined 0.323 r_nbtor_refined 0.304 r_nbd_refined 0.252 r_symmetry_vdw_refined 0.198 r_chiral_restr 0.112 r_xyhbond_nbd_refined 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing