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Crystal structure of Cu(I)CusF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZEQ PDB ENTRY 1ZEQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.5M AMMONIUM SULFATE 5% ISOPROPANOL, pH 7
Crystal Properties Matthews coefficient Solvent content 1.9 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.468 α = 90 b = 41.264 β = 90 c = 44.573 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 96.7 0.05 27.2 3.5 8250 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 80.5 0.22 4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZEQ 1.7 30.28 2 7573 370 96.3 0.239 0.238 0.263 RANDOM 37.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 2.42 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 52.21 r_dihedral_angle_4_deg 21.508 r_dihedral_angle_3_deg 12.65 r_dihedral_angle_1_deg 6.17 r_scangle_it 2.966 r_scbond_it 1.804 r_angle_refined_deg 1.268 r_mcangle_it 1.09 r_mcbond_it 0.662 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 52.21 r_dihedral_angle_4_deg 21.508 r_dihedral_angle_3_deg 12.65 r_dihedral_angle_1_deg 6.17 r_scangle_it 2.966 r_scbond_it 1.804 r_angle_refined_deg 1.268 r_mcangle_it 1.09 r_mcbond_it 0.662 r_nbtor_refined 0.3 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing