X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.9858.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.41α = 90
b = 78.883β = 104.11
c = 93.341γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU-MSCMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.439980.05142.117632
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.594.90.162

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2V7J2.490.541763295398.10.1840.1820.213RANDOM2.91
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.390.52-1.752.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.122
r_dihedral_angle_4_deg18.561
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg5.123
r_angle_refined_deg1.119
r_scangle_it1.108
r_scbond_it0.639
r_mcangle_it0.375
r_nbtor_refined0.295
r_mcbond_it0.217
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.122
r_dihedral_angle_4_deg18.561
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg5.123
r_angle_refined_deg1.119
r_scangle_it1.108
r_scbond_it0.639
r_mcangle_it0.375
r_nbtor_refined0.295
r_mcbond_it0.217
r_nbd_refined0.191
r_symmetry_vdw_refined0.173
r_xyhbond_nbd_refined0.127
r_symmetry_hbond_refined0.122
r_chiral_restr0.076
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2698
Nucleic Acid Atoms
Solvent Atoms157
Heterogen Atoms59

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling