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Crystal structure of the T315I Abl mutant in complex with the inhibitor PHA-739358
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPU PDB ENTRY 1FPU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% PEG 4000 ,1M HEPES PH 7.0, 0.1 M MGCL2,
Crystal Properties Matthews coefficient Solvent content 3.2 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.757 α = 90 b = 159.757 β = 90 c = 56.931 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 100 0.08 12 5 29049 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 100 0.505 2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FPU 2.5 30 27517 1476 99.9 0.209 0.207 0.246 0.2338 RANDOM 33.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.29 0.59 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.781 r_dihedral_angle_3_deg 16.241 r_dihedral_angle_4_deg 14.912 r_dihedral_angle_1_deg 6.596 r_angle_refined_deg 1.58 r_nbtor_refined 0.313 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.781 r_dihedral_angle_3_deg 16.241 r_dihedral_angle_4_deg 14.912 r_dihedral_angle_1_deg 6.596 r_angle_refined_deg 1.58 r_nbtor_refined 0.313 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4400 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing