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Structure of human MAO B in complex with the selective inhibitor 7-(3- chlorobenzyloxy)-4-(methylamino)methyl-coumarin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJA PDB ENTRY 1OJA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.52 50.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.998 α = 90 b = 222.539 β = 90 c = 86.202 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 99.6 0.07 3.4 138335
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OJA 1.7 113.23 134828 3505 99.5 0.173 0.172 0.1711 0.201 0.1988 RANDOM 14.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -0.28 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.631 r_dihedral_angle_4_deg 16.426 r_dihedral_angle_3_deg 12.945 r_dihedral_angle_1_deg 5.608 r_scangle_it 3.134 r_scbond_it 2.026 r_angle_refined_deg 1.289 r_mcangle_it 1.153 r_mcbond_it 0.751 r_symmetry_hbond_refined 0.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.631 r_dihedral_angle_4_deg 16.426 r_dihedral_angle_3_deg 12.945 r_dihedral_angle_1_deg 5.608 r_scangle_it 3.134 r_scbond_it 2.026 r_angle_refined_deg 1.289 r_mcangle_it 1.153 r_mcbond_it 0.751 r_symmetry_hbond_refined 0.342 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.114 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7911 Nucleic Acid Atoms Solvent Atoms 921 Heterogen Atoms 152
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling