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I92A FLAVODOXIN FROM ANABAENA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OBO PDB ENTRY 1OBO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 30% PEG4K, 100 MM TRIS/HCL PH 8.5, 0.2 M MGCL2
Crystal Properties Matthews coefficient Solvent content 2.09 41.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.96 α = 90 b = 37.491 β = 123.65 c = 90.602 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER HELIOS 2006-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 26.58 94.4 0.08 20.03 9.91 21357
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.1 83.2 0.37 4.27 4.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OBO 1.99 26.13 19386 1056 94.8 0.193 0.189 0.1885 0.271 0.2628 RANDOM 24.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.464 r_dihedral_angle_4_deg 21.333 r_dihedral_angle_3_deg 19.065 r_dihedral_angle_1_deg 7.374 r_scangle_it 5.222 r_scbond_it 3.42 r_mcangle_it 2.357 r_angle_refined_deg 2.062 r_mcbond_it 1.399 r_symmetry_vdw_refined 0.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.464 r_dihedral_angle_4_deg 21.333 r_dihedral_angle_3_deg 19.065 r_dihedral_angle_1_deg 7.374 r_scangle_it 5.222 r_scbond_it 3.42 r_mcangle_it 2.357 r_angle_refined_deg 2.062 r_mcbond_it 1.399 r_symmetry_vdw_refined 0.412 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.304 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.138 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2642 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data reduction SAINT data scaling SADABS data scaling MOLREP phasing