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Crystal structure of Salmonella typhimurium SurE at 2.75 angstrom resolution in monoclinic form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J9J PDB ENTRY 1J9J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M MES (PH 6.5) AND 12% PEG 20,000
Crystal Properties Matthews coefficient Solvent content 3.1 60.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.081 α = 90 b = 95.299 β = 98.93 c = 94.572 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 50 99.6 0.08 14.3 4.1 37552
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.85 99.8 0.5 2.32 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J9J 2.71 93.25 35604 1884 97.65 0.19271 0.18952 0.1963 0.25428 RANDOM 46.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.92 -0.29 -0.56 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.672 r_dihedral_angle_3_deg 20.952 r_dihedral_angle_4_deg 18.658 r_dihedral_angle_1_deg 7.76 r_scangle_it 3.117 r_scbond_it 1.932 r_angle_refined_deg 1.801 r_mcangle_it 1.237 r_mcbond_it 0.694 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.672 r_dihedral_angle_3_deg 20.952 r_dihedral_angle_4_deg 18.658 r_dihedral_angle_1_deg 7.76 r_scangle_it 3.117 r_scbond_it 1.932 r_angle_refined_deg 1.801 r_mcangle_it 1.237 r_mcbond_it 0.694 r_nbtor_refined 0.322 r_nbd_refined 0.245 r_symmetry_hbond_refined 0.22 r_symmetry_vdw_refined 0.204 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.122 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7542 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing