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The isomerase domain of human glutamine-fructose-6-phosphate transaminase 1 (GFPT1) in complex with fructose 6-phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOQ PDB ENTRY 1MOQ
Crystallization Crystal Properties Matthews coefficient Solvent content 3.05 59.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.824 α = 90 b = 178.824 β = 90 c = 157.113 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 55 99.2 0.05 22.6 3.4 282618
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.39 96.8 0.21 5.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MOQ 2.29 54.89 82104 1957 99.2 0.168 0.167 0.2206 0.185 RANDOM 37.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.25 -10.25 20.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.739 r_dihedral_angle_4_deg 17.094 r_dihedral_angle_3_deg 13.654 r_dihedral_angle_1_deg 5.568 r_scangle_it 1.991 r_scbond_it 1.215 r_angle_refined_deg 1.094 r_angle_other_deg 0.852 r_mcangle_it 0.842 r_mcbond_it 0.448
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.739 r_dihedral_angle_4_deg 17.094 r_dihedral_angle_3_deg 13.654 r_dihedral_angle_1_deg 5.568 r_scangle_it 1.991 r_scbond_it 1.215 r_angle_refined_deg 1.094 r_angle_other_deg 0.852 r_mcangle_it 0.842 r_mcbond_it 0.448 r_chiral_restr 0.063 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11006 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing