☰ Navigation Tabs
Structure of a phosphoinositide 3-kinase alpha adaptor-binding domain (ABD) in a complex with the iSH2 domain from p85 alpha
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.2M MG(NO3)2, 20% PEG3350 (HAMPTON), 5MM TRIS-HCL PH 7.0 (25C), 5% GLYCEROL AND 5MM FRESH DTT
Crystal Properties Matthews coefficient Solvent content 2.18 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.799 α = 90 b = 62 β = 90 c = 74.654 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD BENT MIRROR M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9794,0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 47.67 98.3 0.05 13.48 3.53 10926 -3 45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.42 100 0.2 3.32 3.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 47.67 10385 521 97.7 0.236 0.233 0.2466 0.292 0.2971 RANDOM 30.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 2.03 -2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.452 r_scangle_it 3.344 r_scbond_it 1.951 r_mcangle_it 1.371 r_angle_refined_deg 1.259 r_angle_other_deg 0.785 r_mcbond_it 0.701 r_symmetry_vdw_other 0.279 r_symmetry_hbond_refined 0.265 r_nbd_other 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.452 r_scangle_it 3.344 r_scbond_it 1.951 r_mcangle_it 1.371 r_angle_refined_deg 1.259 r_angle_other_deg 0.785 r_mcbond_it 0.701 r_symmetry_vdw_other 0.279 r_symmetry_hbond_refined 0.265 r_nbd_other 0.226 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.119 r_nbtor_other 0.087 r_chiral_restr 0.072 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2217 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SnB phasing autoSHARP phasing REFMAC refinement